Journal Publications (*: corresponding author)
-
Y.-K. Shieh, D.-Y. Peng, Y.-H. Chen, T.-W. Wu
and C.L. Lu*,
An integer linear programming approach for scaffolding based on exemplar breakpoint distance, Journal of Computational Biology, 29 (2022) 961-973.
-
S.C. Liu, Y.R. Ju and C.L. Lu*,
Multi-CSAR: a web server for scaffolding contigs using multiple reference genomes, Nucleic Acids Research, 50 (2022) 500-509.
-
Y.-K. Shieh, S.J. Shyu*,
C.L. Lu
and
R.C.T. Lee,
The exact multiple pattern matching problem solved by a reference tree approach, Theoretical Computer Science, 882 (2021) 29-48.
-
T.T. Ta, Y.-K. Shieh and
C.L. Lu*,
Computing a longest common almost-increasing subsequence of two sequences, Theoretical Computer Science, 854 (2021) 44-51.
-
M.-F. Hsieh,
C.L. Lu
and C.Y. Tang*,
Clover: a clustering-oriented de novo assembler for Illumina sequences, BMC Bioinformatics, 21 (2020) 528.
-
K.-T. Chen, H.-T. Shen and C.L. Lu*,
Multi-CSAR: a multiple reference-based contig scaffolder using algebraic rearrangements,
BMC Systems Biology, 12 (2018) 139.
-
K.-T. Chen and C.L. Lu*,
CSAR-web: a web server of contig scaffolding using algebraic rearrangements,
Nucleic Acids Research, 46 (2018) 55-59.
-
T.T. Ta, C.-Y. Lin
and C.L. Lu*,
Two-string consensus problem under non-overlapping inversion and transposition distance,
Information Processing Letters, 130 (2018) 46-51.
-
K.-T. Chen, C.-L. Liu, S.-H. Huang, H.-T. Shen, Y.-K. Shieh, H.-T. Chiu
and C.L. Lu*,
CSAR: a contig scaffolding tool using algebraic rearrangements,
Bioinformatics, 34 (2018) 109-111.
-
C.-Y. Yen, J.-C. Lin, K.-T. Chen
and C.L. Lu*,
R3D-BLAST2: an improved search tool for similar RNA 3D substructures,
BMC Bioinformatics, 18 (2017) 574.
-
K.-T. Chen, C.-J. Chen, H.-T. Shen, C.-L. Liu, S.-H. Huang and
C.L. Lu*,
Multi-CAR: a tool of contig scaffolding using multiple references,
BMC Bioinformatics, 17 (2016) 469.
-
T.T. Ta, C.-Y. Lin and
C.L. Lu*,
An efficient algorithm for computing non-overlapping inversion and transposition distance,
Information Processing Letters, 116 (2016) 744-749.
-
C.-H. Yang, C.-T. Shih, K.-T. Chen, P.-H. Lee, P.-H. Tsai, J.-C. Lin, C.-Y. Yen, T.-Y. Lin and
C.L. Lu*,
iPARTS2: an improved tool for pairwise alignment of RNA tertiary structures, version 2,
Nucleic Acids Research, 44 (2016) 328-332.
-
K.-T. Chen, C.-L. Li, H.-T. Chiu and
C.L. Lu*,
An efficient algorithm for one-sided block ordering problem under block-interchange distance,
Theoretical Computer Science,
609 (2016) 296-305.
-
C.L. Lu*,
An efficient algorithm for contig ordering problem under algebraic rearrangement distance,
Journal of Computational Biology,
22 (2015) 975-987.
-
C.S. Ou,
C.L. Lu and
R.C.T. Lee*,
A systematical and parallel approach to solve problems involving special properties of bit-vectors,
Computer Journal,
58 (2015) 1112-1121.
-
C.L. Lu*,
K.-T. Chen, S.-Y. Huang and H.-T. Chiu,
CAR: contig assembly of prokaryotic draft genomes using rearrangements,
BMC Bioinformatics,
15 (2014) 381.
-
C.-L. Li, K.-T. Chen and C.L. Lu*,
Assembling contigs in draft genomes using reversals and block-interchanges,
BMC Bioinformatics,
14 (2013) S9.
-
C.W. Lu,
C.L. Lu and
R.C.T. Lee*,
A new filtration method and a hybrid strategy for approximate string matching,
Theoretical Computer Science,
481 (2013) 9-17.
-
K.-H. Huang, K.-T. Chen and
C.L. Lu*,
Sorting permutations by cut-circularize-linearize-and-paste operations,
BMC Genomics, 12 (2011) S26.
-
Y.-C. Liu, C.-H. Yang, K.-T. Chen, J.-R. Wang, M.-L. Cheng, J.-C. Chung, H.-T. Chiu
and C.L. Lu*,
R3D-BLAST: a search tool for similar RNA 3D substructures,
Nucleic Acids Research, 39 (2011) 45-49.
-
Y.-L. Huang, C.-C. Huang,
C.Y. Tang
and C.L. Lu*,
SoRT2: a tool for sorting genomes and reconstructing phylogenetic
trees by reversals, generalized transpositions and translocations,
Nucleic Acids Research, 38 (2010) 221-227.
-
C.-W. Wang, K.-T. Chen
and C.L. Lu*,
iPARTS: an improved tool of pairwise alignment of RNA tertiary structures,
Nucleic Acids Research, 38 (2010) 340-347.
-
Y.-L. Huang, C.-C. Huang,
C.Y. Tang
and C.L. Lu*,
An improved algorithm for sorting by block-interchanges based on permutation groups,
Information Processing Letters, 110 (2010) 345-350.
-
C.-H. Cheng, C.-H. Yang, H.-T. Chiu
and C.L. Lu*,
Reconstructing genome trees of prokaryotes using overlapping genes,
BMC Bioinformatics, 11 (2010) 102.
-
Y.-L. Huang and C.L. Lu*,
Sorting by reversals, generalized transpositions and translocations using permutation groups,
Journal of Computational Biology,
17 (2010) 685-705.
-
C.-E. Lai, M.-Y. Tsai, Y.-C. Liu, C.-W. Wang, K.-T. Chen and
C.L. Lu*,
FASTR3D: a fast and accurate search tool for similar RNA 3D structures,
Nucleic Acids Research, 37 (2009) 287-295.
-
H.-H. Su, C.L. Lu and
C.Y. Tang*,
An improved algorithm for finding a length-constrained maximum-density subtree in a tree,
Information Processing Letters, 109 (2008) 161-164.
-
Y.-F. Chang, Y.-L. Huang
and C.L. Lu*,
SARSA: a web tool for structural alignment of RNA using a structural alphabet,
Nucleic Acids Research, 36 (2008) 19-24.
-
L.-W. Jiang, K.-L. Lin
and C.L. Lu*,
OGtree: a tool for creating genome trees of prokaryotes based
on overlapping genes,
Nucleic Acids Research, 36 (2008) 475-480.
-
Y.S. Chung, C.L. Lu and
C.Y. Tang*,
Constrained sequence alignment: a general model and the hardness results,
Discrete Applied Mathematics, 155 (2007) 2471-2486.
-
Y.S. Chung, W.H. Lee,
C.Y. Tang
and C.L. Lu*,
RE-MuSiC: a tool for multiple sequence alignment with regular expression constraints,
Nucleic Acids Research, 35 (2007) 639-644.
-
Y.S. Chung, C.L. Lu and
C.Y. Tang*,
Efficient algorithms for regular expression constrained sequence alignment,
Information Processing Letters, 103 (2007) 240-246.
-
C.L. Lu*,
Y.-L. Huang, T.C. Wang and H.-T. Chiu,
Analysis of circular genome rearrangement by fusions, fissions and block-interchanges,
BMC Bioinformatics, 7 (2006) 295.
-
Y.C. Lin,
C.L. Lu*,
Y.-C. Liu
and C.Y. Tang,
SPRING: a tool for the analysis of genome rearrangement using reversals and block-interchanges,
Nucleic Acids Research, 34 (2006) 696-699.
-
C.-H. Huang,
C.L. Lu* and H.-T. Chiu,
A heuristic approach for detecting RNA H-type pseudoknots,
Bioinformatics, 21 (2005) 3501-3508.
-
Q. Wu,
C.L. Lu* and
R.C.T. Lee,
The approximability of the weighted hamiltonian path completion problem on a tree,
Theoretical Computer Science, 341 (2005) 385-397.
-
C.L. Lu*, T.C. Wang, Y.C. Lin
and C.Y. Tang,
ROBIN: a tool for genome rearrangement of block-interchanges,
Bioinformatics, 21 (2005) 2780-2782.
-
C.L. Lu* and Y.P. Huang,
A memory-efficient algorithm for multiple sequence alignment with constraints,
Bioinformatics, 21 (2005) 20-30.
-
Y.C. Lin, C.L. Lu*,
H.-Y. Chang
and C.Y. Tang,
An efficient algorithm for sorting by block-interchanges and its
application to the evolution of vibrio species,
Journal of Computational Biology, 12 (205) 102-112.
-
Y.-T. Chen,
H.-Y. Chang,
C.L. Lu and
H.-L. Peng*,
Evolutionary analysis of the two-component systems in Pseudomonas Aeruginosa PAO1,
Journal of Molecular Evolution, 59 (2004) 725-737.
-
Y.T. Tsai,
Y.P. Huang, C.T. Yu and C.L. Lu*,
MuSiC: a tool for multiple sequence alignment with constraints,
Bioinformatics, 20 (2004) 2309-2311.
- C.Y. Tang*,
C.L. Lu, M.D.T. Chang,
Y.T. Tsai,
Y.J. Sun, K.M. Chao, J.M. Chang, Y.H. Chiou, C.M. Wu, H.T. Chang and W.I. Chou,
Constrained multiple sequence alignment tool development and its
application to RNase family alignment,
Journal of Bioinformatics and Computational Biology, 1 (2003) 267-287.
- C.L. Lu,
C.Y. Tang* and
R.C.T. Lee,
The full Steiner tree problem,
Theoretical Computer Science, 306 (2003) 55-67.
- C.L. Lu,
S.-L. Peng
and C.Y. Tang*,
Efficient minus and signed domination in graphs,
Theoretical Computer Science, 301 (2003) 381-397.
-
C.L. Lu,
M.T. Ko
and C.Y. Tang*,
Perfect edge domination and efficient edge domination in graphs,
Discrete Applied Mathematics, 119 (2002) 227-250.
-
C.L. Lu and
C.Y. Tang*,
Weighted efficient domination problem on some perfect graphs,
Discrete Applied Mathematics, 117 (2002) 163-182.
-
C.L. Lu and
C.Y. Tang*,
Solving the weighted efficient edge domination problem on bipartite permutation graphs,
Discrete Applied Mathematics, 87 (1998) 203-211.
-
C.L. Lu and
C.Y. Tang*,
A linear-time algorithm for the weighted feedback vertex problem on interval graphs,
Information Processing Letters, 61 (1997) 107-111.
Book Chapters
-
Y.-K. Shieh, S.-C. Liu and C.L. Lu*,
Scaffolding contigs using multiple reference genomes, in: P. Behzadi ed., Computational Biology and Chemistry, IntechOpen (ISBN: 978-1-78985-691-0), 2020.
- C.L. Lu*,
Sorting by transpositions and reversals (approximate ratio 1.5),
in: M.-Y. Kao ed., Encyclopedia of Algorithms, 2nd edition,
Springer (ISBN: 978-1-4939-2864-4), 2016, pp. 2022-2026.
- C.L. Lu*
and C.Y. Tang,
Sorting genomes by rearrangements and its application to phylogeny reconstruction,
in: Genomics III - Methods, Techniques and Applications,
iConcept Press (ISBN: 978-1-922227-416), 2014, pp. 229-224.
- C.L. Lu*,
Sorting by transpositions and reversals (approximate ratio 1.5),
in: M.-Y. Kao ed., Encyclopedia of Algorithms, Springer (ISBN: 978-0-387-30770-1), 2008, pp. 863-866.
-
C.L. Lu*, Y.C. Lin, Y.-L. Huang
and C.Y. Tang,
Analysis of genome rearrangement by block-interchanges,
in: N. Bergman ed.,
Methods in Molecular Biology, vol. 396
(Comparative Genomics, Volume 2),
Humana Press (ISBN: 978-1-934115-37-4), 2007, pp. 121-134.
Conference Publications
-
K.-T. Chen, H.-T. Shen and C.L. Lu*,
Multi-CSAR: a multiple reference-based contig scaffolder using algebraic rearrangements,
in: Proceedings of the 29th International Conference on Genome Informatics
(GIW 2018), 2018.
-
C.-Y. Yen, J.-C. Lin, K.-T. Chen
and C.L. Lu*,
R3D-BLAST2: an improved search tool for similar RNA 3D substructures,
in: Proceedings of the 16th International Conference on Bioinformatics
(InCoB 2017),
2017.
-
Y.-K. Shieh, S.-J. Shyu,
C.L. Lu
and
R.C.T. Lee*,
A tree approach for solving the exact multiple string matching problem,
in: Proceedings of the
34th Workshop on Combinatorial Mathematics and Computational Theory
(ALGO 2017), 2017, pp. 33-42.
-
K.-T. Chen, C.-J. Chen, H.-T. Shen, C.-L. Liu, S.-H. Huang and
C.L. Lu*,
Multi-CAR: a tool of contig scaffolding using multiple references,
in: Proceedings of the 27th International Conference on Genome Informatics
(GIW 2016), 2016.
-
C.-H. Yang, C.-T. Shih, K.-T. Chen, P.-H. Lee, P.-H. Tsai, J.-C. Lin, C.-Y. Yen, T.-Y. Lin and
C.L. Lu*,
iPARTS2: an improved tool for pairwise alignment of RNA tertiary structures, version 2,
in: Proceedings of the 27th International Conference on Genome Informatics
(GIW 2016), 2016.
-
T.T. Ta, C.-Y. Lin and
C.L. Lu*,
An efficient algorithm for computing non-overlapping inversion and transposition distance,
in: Proceedings of the
32th Workshop on Combinatorial Mathematics and Computational Theory
(ALGO 2015), 2015, pp. 55-61.
-
S.-W. Chou, C.-H. Yang, K.-T. Chen and
C.L. Lu*,
Prefix block-interchanges on binary strings,
in: Proceedings of the 2014 International Computer Symposium
(ICS 2014),
Frontiers in Artificial Intelligence and Applications, IOS Press,
vol. 274, 2014, pp. 1960-1969.
-
S.-Y. Huang, C.-H. Yang, T.T. Ta,
C.L. Lu*,
Approximate string matching problem under non-overlapping inversion distance,
in: Proceedings of the 2014 International Computer Symposium
(ICS 2014),
Frontiers in Artificial Intelligence and Applications, IOS Press,
vol. 274, 2014, pp. 40-48.
-
C.W. Lu,
C.L. Lu and
R.C.T. Lee*,
Improved exact string matching algorithms based upon selective matching
order and branch and bound approach,
in: Proceedings of the
31th Workshop on Combinatorial Mathematics and Computational Theory
(ALGO 2014), 2014, pp. 19-28.
-
K.-T. Chen, C.-L. Li, C.-H. Yang and C.L. Lu*,
An efficient algorithm for one-sided block ordering problem with block-interchange distance,
in: D.-Z. Du and G. Zhang eds., Proceedings of the
19th Annual International Computing and Combinatorics Conference
(COCOON 2013),
Lecture Notes in Computer Science,
Springer-Verlag,
vol. 7936, 2013, pp. 409-420.
-
C.S. Ou, C.L. Lu and
R.C.T. Lee*,
Solving the subcircuit extraction problem by using bit-parallel filtering algorithm,
in: Proceedings of the
30th Workshop on Combinatorial Mathematics and Computational Theory
(ALGO 2013),
2013, pp. 116-123.
-
C.-L. Li, K.-T. Chen and C.L. Lu*,
Assembling contigs in draft genomes using reversals and block-interchanges,
in: Proceedings of the Third Annual RECOMB Satellite Workshop on
Massively Parallel Sequencing
(RECOMB-seq 2013), 2013.
-
C.W. Lu,
C.L. Lu and
R.C.T. Lee*,
A new filtration method and a hybrid strategy for approximate string matching,
in: Proceedings of the 2012 International Computer Symposium
(ICS 2012),
Advances in Intelligent Systems and Applications,
Springer-Verlag,
vol. 1, 2012, pp. 143-155.
-
K.-H. Huang, K.-T. Chen and
C.L. Lu*,
Sorting permutations by cut-circularize-linearize-and-paste operations,
in: Proceedings of the 10th International Conference on Bioinformatics and 1st International Society for Computational Biology Asia Joint Conference
(InCoB/ISCB-Asia 2011),
2011.
-
K.-H. Huang, K.-T. Chen and
C.L. Lu*,
Sorting by cut-circularize-linearize-and-paste operations,
in: Proceedings of the 28th Workshop on Combinatorial Mathematics and Computational Theory
(ALGO 2011),
2011, pp. 81-89.
-
C.S. Ou, C.L. Lu
and
R.C.T. Lee*,
A bit-parallel approach to solve approximation string matching problem for unlimited
pattern length,
in: 4th Annual Meeting of Asian Association for Algorithms and Computation
(AAAC 2011), 2011.
-
K.-T. Chen, C.-W. Wang and C.L. Lu*,
An improved tool of pairwise alignment of RNA tertiary structures,
in: 9th International Conference on Bioinformatics
(InCoB 2010), 2010.
-
C.-H. Yang, C.-H. Cheng, H.-T. Chiu and
C.L. Lu*,
OGtree2: A tool for reconstructing genome trees of prokaryotes using
overlapping genes,
in: 9th International Conference on Bioinformatics
(InCoB 2010), 2010.
-
K.-H. Chen, G.-S. Huang,
C.L. Lu and
R.C.T. Lee*,
A multidimensional divide-and-conquer algorithm for assigning secondary
structures in proteins,
in: Proceedings of the 26th Workshop on Combinatorial
Mathematics and Computational Theory
(ALGO 2009), 2009, pp. 1-8.
-
Y.-L. Huang, C.-C.Huang,
C.Y. Tang,
and C.L. Lu*,
An improved algorithm for sorting by block-interchanges based
on permutation groups,
in: Proceedings of the 26th Workshop on Combinatorial
Mathematics and Computational Theory
(ALGO 2009), 2009, pp. 9-14.
-
H.-H. Su,
C.L. Lu and
C.Y. Tang*,
An improved algorithm for finding a length-constrained maximum-density subtree in a tree,
in: Proceedings of the 25th Workshop on Combinatorial Mathematics and Computational Theory
(ALGO 2008), 2008, pp. 146-150.
-
Y.-L. Huang, C.-J. Wu, H.-T. Chiu,
C.Y. Tang
and C.L. Lu*,
A bioinformatics approach to improving prediction of programmed ribosomal
frameshifting, in: S. Ranganathan ed., Proceedings of the Sixth International Conference on Bioinformatics
(InCoB 2007), 2007.
-
Y.S. Chung, C.L. Lu and
C.Y. Tang*,
Efficient algorithms for regular expression constrained sequence alignment,
in: M. Lewenstein and G. Valiente eds.,
Proceedings of the 17th Annual Symposium on Combinatorial Pattern Matching
(CPM 2006),
Lecture Notes in Computer Science,
Springer-Verlag,
vol. 4009, 2006, pp. 389-400.
-
K.H. Chen, C.S. Tsai, B.M.T. Lin,
C.Y. Tang,
C.L. Lu,
and
R.C.T. Lee*,
The application of multidimensional scaling to the protein
structure alignment problem,
in: Proceedings of the 22nd Workshop on Combinatorial Mathematics and
Computational Theory
(ALGO 2005), 2005, pp. 97-106.
-
T. Kloks, C.M. Lee, J. Liu,
C.L. Lu and
S.-L. Peng*,
Descrying induced interval graphs,
in: Proceedings of the 2003 European Conference on Combinatorics, Graph Theory and Applications
(Eurocomb 2003), 2003, pp. 234-239.
-
Y.H. Chen,
C.L. Lu and
C.Y. Tang*,
On the full and bottleneck full Steiner tree problems,
in: T. Warnow and B. Zhu eds.,
Proceedings of the Ninth Annual International Computing and Combinatorics Conference
(COCOON 2003),
Lecture Notes in Computer Science,
Springer-Verlag,
vol. 2697, 2003, pp. 122-129.
- C.Y. Tang*,
C.L. Lu,
M.D.T. Chang,
Y.T. Tsai,
Y.J. Sun,
K.M. Chao,
J.M. Chang, Y.H. Chiou, C.M. Wu, H.T. Chang and W.I. Chou,
Constrained multiple sequence alignment tool development and its
application to RNase family alignment,
in: V. Markstein and P. Markstein eds.,
Proceedings of the First IEEE Computer Society Bioinformatics Conference
(CSB 2002),
2002, pp. 127-137.
- C.L. Lu,
C.Y. Tang* and
R.C.T. Lee,
The full Steiner tree problem in phylogeny,
in: O.H. Ibarra and L. Zhang eds.,
Proceedings of the Eighth Annual International Computing and Combinatorics Conference
(COCOON 2002),
Lecture Notes in Computer Science,
Springer-Verlag,
vol. 2387, 2002, pp. 107-116.
- C.Y. Tang*,
C.L. Lu,
M.D.T. Chang, Y.J. Sun, Y.T. Tsai, J.M. Chang,
Y.H. Chiou, C.M. Wu, H.T. Chang, W.I. Chou and S.C. Chiang,
Constrained sequence alignment tool development and its
application to RNase family alignment,
in: F. Valafar ed.,
Proceedings of the 2002 International Conference on Mathematics and
Engineering Techniques in Medicine and Biological Sciences
(METMBS 2002),
2002, pp. 365-370.
- C.L. Lu, Z.Y. Su and
C.Y. Tang*,
A new measure of edit distance between labeled trees,
in: J. Wang ed.,
Proceedings of the Seventh Annual International Computing and Combinatorics Conference
(COCOON 2001),
Lecture Notes in Computer Science,
Springer-Verlag,
vol. 2108, 2001, pp. 338-348.
- C.L. Lu,
S.-L. Peng
and C.Y. Tang*,
Efficient minus and signed domination in graphs,
in: D.T. Lee and S.H. Teng eds.,
Proceedings of the Eleventh Annual International Symposium on Algorithms
and Computation
(ISAAC 2000),
Lecture Notes in Computer Science,
Springer-Verlag,
vol. 1969, 2000, pp. 241-253.
-
Q. Wu,
C.L. Lu and
R.C.T. Lee*,
An approximate algorithm for the weighted Hamiltonian path completion problem on a tree,
in: D.T. Lee and S.H. Teng eds.,
Proceedings of the
Eleventh Annual International Symposium on Algorithms and Computation
(ISAAC 2000),
Lecture Notes in Computer Science,
Springer-Verlag,
vol. 1969, 2000, pp. 156-167.
-
Y.D. Liang,
C.L. Lu and
C.Y. Tang*,
Efficient domination on permutation graphs and trapezoid graphs,
in: T. Jiang and D.T. Lee eds.,
Proceedings of the
Third Annual International Computing and Combinatorics Conference
(COCOON 1997),
Lecture Notes in Computer Science,
Springer-Verlag,
vol. 1276, 1997, pp. 232-241.
-
C.L. Lu and
C.Y. Tang*,
On the Complexity of Efficient Minus Domination,
in: Proceedings of the 14th Workshop on Combinatorial Mathematics
and Computation Theory (ALGO 1997), 1997, pp. 45-48.
-
C.L. Lu and
C.Y. Tang*,
On the complexity of the perfect edge domination problem,
in: Proceedings of International Conference on Algorithms
(joint with International Computer Symposium ICS 1996),
1996, pp. 64-71.
-
C.L. Lu and
C.Y. Tang*,
Solving the weighted efficient edge domination problem on bipartite permutation graphs,
in: Proceedings of the 13th Workshop on Combinatorial Mathematics
and Computation Theory (ALGO 1996), 1996, pp. 118-124.
-
C.L. Lu and
C.Y. Tang*,
The complexity of the efficient edge domination problem,
in: Proceedings of the 12th Workshop on Combinatorial Mathematics
and Computation Theory (ALGO 1996), 1996, pp. 145-149.
-
C.L. Lu and
C.Y. Tang*,
A linear time algorithm for the weighted feedback vertex problem on interval graphs,
in: Proceedings of the 11th Workshop on Combinatorial Mathematics
and Computation Theory (ALGO 1995), 1995, pp. 80-83.
-
M.S. Chang*
and C.L. Lu,
Efficient algorithms for the weighted k-domination problem and its
variants on interval and circular-arc graphs,
in: Proceedings of the 7th Workshop on on Discrete Mathematics
and Theory of Computation (ALGO 1993), 1993.
-
M.S. Chang*,
F.H. Wang, S.-L. Peng
and C.L. Lu,
Irredundance of weighted interval graphs,
in: Proceedings of the 6th Workshop on on Discrete Mathematics
and Theory of Computation (ALGO 1992), 1992.
Posters
-
K-T Chen and C.L. Lu*,
CSAR: a contig scaffolding tool using algebraic rearrangements,
in: 5th International Conference on Algorithms for Computational Biology
(AlCoB 2018),
Hong Kong, 2018
-
K-T Chen, H-T Chiu and
C.L. Lu*,
CAR: contig assembly of prokaryotic draft genomes using rearrangements,
in: 1st joint conference between International Conference on Genome Informatics and
International Conference on Bioinformatics
(GIW/InCoB 2015),
Odaiba, Tokyo, 2015.
-
C.L. Lu*,
C-L Li, K-T Chen, C-H Yang, W-Y Tsai and H-T Chiu,
An efficient algorithm for ordering partially assembled genomes using block-interchanges,
in: 23rd International Conference on Genome Informatics
(GIW 2012),
Tainan, Taiwan, 2012.
-
C.L. Lu*,
C-L Lee, W-Y Tsai and H-T Chiu,
Ordering partially assembled genomes using block-interchanges,
in: 11th International Conference on Bioinformatics
(InCoB 2012),
Bangkok, Thailand, 2012.
-
C.-E. Lai, M.-Y. Tsai, Y.-C. Liu, C.-W. Wang, K.-T. Chen and
C.L. Lu*,
FASTR3D: a fast and accurate search tool for similar RNA 3D structures,
in: 8th International Conference on Bioinformatics
(InCoB 2009),
Singapore, 2009.
-
Y.-F. Chang, Y.-L. Huang
and C.L. Lu*,
SARSA: a web tool for structural alignment of RNA using a structural alphabet,
in: 7th International Conference on Bioinformatics
(InCoB 2008), Taipei, Taiwan, 2008.
-
Y.-L. Huang, C.-J. Wu, H.-T. Chiu,
C.Y. Tang
and C.L. Lu*,
A bioinformatics approach to improving the prediction of programmed -1 ribosomal
frameshifting,
in: 15th Annual International Conference on Intelligent Systems for
Molecular Biology
(ISMB 2007) & 6th European Conference on Computational Biology
(ECCB 2007), Vienna, Austria, 2007.